Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_113364553_113375894_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113364553 - 113375894

Intron Length:

11342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTGCTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

AAAGAATAAACT

Flanking Amino Acid:

LAFNALLHSHRPDLFDWNAV

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

76.9

33.7

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

79.5

0.66

0.9

77.9

36.6

Minor 5ss

31.4

-2.1

3.1

39.2

46.2

Minor BPS

43.2

-0.4

58.96

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007792

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008080

113357525 - 113484406

126882