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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_113442071_113442431_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113442071 - 113442431
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
TTTTTATTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGTTTTTATT
Flanking Amino Acid:
VVKEQFHTHEGFMMELTAHQ
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.8
35.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.5
0.78
0.9
85.4
34.1
Minor 5ss
36.9
-1.5
3.7
57.9
46.7
Minor BPS
58.3
0.34
1.7
78.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008080
113357525 - 113484406
126882