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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_113450035_113452829_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113450035 - 113452829
Intron Length:
2795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATGTTTTAATT
Flanking Amino Acid:
DLKRQVEEHKAFQDDLEQEQ
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.1
0.7
0.9
74.2
39.4
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
69.2
0.68
1.3
80
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008080
113357525 - 113484406
126882