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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_113452950_113462313_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113452950 - 113462313
Intron Length:
9364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
ATGTAATCAAAT
Flanking Amino Acid:
ATAALEEQLQHFGNRWAAIC
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
84.8
0.78
0.7
77.7
31.1
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
46.1
-0.2
2
66.85
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008080
113357525 - 113484406
126882