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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_113462709_113474909_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
113462709 - 113474909
Intron Length:
12201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTCAATACA
5'SS Class:
weak_major
3'SS Sequence:
ATACTTCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTGTTTTAATA
Flanking Amino Acid:
MSARDFILLSISQAVTTTQT
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.3
0.08
1.3
59
40
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.4
0.57
0.9
69.8
35.7
Minor 5ss
33
-1.9
2.7
40.8
38.8
Minor BPS
65.4
0.48
1.3
69.67
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008080
113357525 - 113484406
126882