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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1138301_1138969_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1138301 - 1138969
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAAG
5'SS Class:
major
3'SS Sequence:
TGGTTCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGGCCATAATT
Flanking Amino Acid:
EEEKQHRVQLGSSDSSSPSS
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
71.2
40.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.7
0.6
1
73.4
41.9
Minor 5ss
34
-1.8
2.8
33.5
41.9
Minor BPS
63.8
0.51
1.7
80.63
41.6

Associated Gene:

Gene:
TMEM209
Ensembl Gene ID:
ENSAPLG00000004647
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004819
1137334 - 1147787
10454