About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1139146_1139844_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1139146 - 1139844
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTTTTTACCA
Flanking Amino Acid:
DLSSKQAAEEVWARVTMNRQ
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.3
0.52
0.9
70
35.3
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
64.8
0.46
1.6
74.03
38.5

Associated Gene:

Gene:
TMEM209
Ensembl Gene ID:
ENSAPLG00000004647
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004819
1137334 - 1147787
10454