About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_113927150_113934018_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113927150 - 113934018
Intron Length:
6869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCACTATT
5'SS Class:
major
3'SS Sequence:
CTTTTCACTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCCTTTTCACT
Flanking Amino Acid:
ALKKQNTELKQFSKEIRQWQ
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.4
81.8
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.8
0.78
0.7
82.3
28
Minor 5ss
42.6
-0.8
2.7
60.7
43.6
Minor BPS
57.6
0.32
1.7
76.22
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042654
113867080 - 114209156
342077
ENSAPLT00000017032
113867080 - 114209156
342077