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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1139917_1141007_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1139917 - 1141007
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GAGCTTTTGACT
Flanking Amino Acid:
MDSWTAKFRNWINETILVPL
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
77.4
37.4
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.6
81
31
Minor 5ss
39.3
-1.2
3
56.4
40.7
Minor BPS
56.2
0.28
1.2
65.39
39.3

Associated Gene:

Gene:
TMEM209
Ensembl Gene ID:
ENSAPLG00000004647
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004819
1137334 - 1147787
10454