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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114127692_114140635_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114127692 - 114140635
Intron Length:
12944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTTTCCCCCACA
Flanking Amino Acid:
PKMTELYQSLADLNNVRFSA
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
82.8
0.74
0.7
77.2
24.9
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
51.9
0.05
2.3
76.63
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042654
113867080 - 114209156
342077
ENSAPLT00000017032
113867080 - 114209156
342077