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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114146098_114149193_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114146098 - 114149193
Intron Length:
3096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TCTATTCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTTTTCTATT
Flanking Amino Acid:
CLNWLLNVYDTGRTGRIRVL
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
74.4
41.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
74.7
0.56
0.9
74.8
34.7
Minor 5ss
46.8
-0.3
2.5
58.8
39.3
Minor BPS
49.2
0.02
1.8
70.85
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042654
113867080 - 114209156
342077
ENSAPLT00000017032
113867080 - 114209156
342077