Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114149280_114151849_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

114149280 - 114151849

Intron Length:

2570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TGATGCTTCAGC

Flanking Amino Acid:

CKAHLEDKYRYLFKQVASST

Intron Amino Acid Position:

777

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

76.2

34.7

Major BPS

84.6

0.86

41.2

Major PPT

84.2

0.77

0.8

77.2

37.1

Minor 5ss

-1.6

45.7

42.5

Minor BPS

45.6

-0.3

2.4

59.6

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016297

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042654

113867080 - 114209156

342077

ENSAPLT00000017032

113867080 - 114209156

342077