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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114162701_114167663_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114162701 - 114167663
Intron Length:
4963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTGTGGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATGA
Flanking Amino Acid:
HYPMVEYCTPTTSGEDVRDF
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.6
0.62
1
73.5
41.8
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
51.9
0.06
2.1
71.02
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042654
113867080 - 114209156
342077
ENSAPLT00000017032
113867080 - 114209156
342077