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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114167801_114168597_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114167801 - 114168597
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTCTCTTCACC
Flanking Amino Acid:
QTVLEGDNMETPVTLINFWP
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
61.1
0.33
1.8
71.01
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017032
113867080 - 114209156
342077
ENSAPLT00000042654
113867080 - 114209156
342077