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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114168637_114174381_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114168637 - 114174381
Intron Length:
5745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TATTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTATTTTAATG
Flanking Amino Acid:
TLINFWPVDSALAEMENSNG
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.3
71.4
40.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85
0.79
0.7
80.5
31.3
Minor 5ss
33.9
-1.8
2.7
39.4
38.9
Minor BPS
69.2
0.47
1.3
71.2
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017032
113867080 - 114209156
342077