Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114173332_114174381_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

114173332 - 114174381

Intron Length:

1050

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAGAC

5'SS Class:

strong_major

3'SS Sequence:

TATTTTTCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTATTTTAATG

Flanking Amino Acid:

THSRIEHYASRLAEMENSNG

Intron Amino Acid Position:

1003

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

71.2

32.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.79

0.7

80.5

31.3

Minor 5ss

36.8

-1.5

3.3

49.4

47.1

Minor BPS

69.2

0.47

1.3

71.2

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016297

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042654

113867080 - 114209156

342077