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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1141860_1142312_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1141860 - 1142312
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AGTAACTGAATA
Flanking Amino Acid:
NQEYLVERIKELSQGGCMSS
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.4
39.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.1
0.77
0.9
81.4
36
Minor 5ss
27.9
-2.5
3.3
40.6
45.6
Minor BPS
50.5
0.01
1.6
61.92
37.4

Associated Gene:

Gene:
TMEM209
Ensembl Gene ID:
ENSAPLG00000004647
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004819
1137334 - 1147787
10454