Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114192186_114209058_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

114192186 - 114209058

Intron Length:

16873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCCCG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

TCTTCTTTGACT

Flanking Amino Acid:

QLNNSFPSSRGHNVGSLFHM

Intron Amino Acid Position:

1210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

66.3

45.2

Major BPS

81.8

0.79

1.1

34.5

Major PPT

93.1

0.97

0.6

91.8

Minor 5ss

38.2

-1.3

48.4

47.3

Minor BPS

82.3

1.1

90.81

33.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016297

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042654

113867080 - 114209156

342077

ENSAPLT00000017032

113867080 - 114209156

342077