About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114308468_114309931_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114308468 - 114309931
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
CATTTAAGAACA
Flanking Amino Acid:
EGVVSQCMLQNNNNLDACCR
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.4
39.1
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
82.7
0.74
0.7
76.9
31.8
Minor 5ss
42.2
-0.9
3.1
55.7
48.5
Minor BPS
45.7
-0.3
1.9
59.56
39.6

Associated Gene:

Gene:
TAB3
Ensembl Gene ID:
ENSAPLG00000002911
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002952
114308279 - 114323251
14973