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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114311064_114311210_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
114311064 - 114311210
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCGG
5'SS Class:
strong_major
3'SS Sequence:
AAAATCACAGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAAAT
Flanking Amino Acid:
TTPPTSSPSRGRAPTENLLN
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
65.3
46
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
49.8
-0
1
43
37.3
Minor 5ss
39.7
-1.2
2.8
50
46.3
Minor BPS
59.2
0.37
1.7
77.65
38.8

Associated Gene:

Gene:
TAB3
Ensembl Gene ID:
ENSAPLG00000002911
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002952
114308279 - 114323251
14973