About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114315299_114317703_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114315299 - 114317703
Intron Length:
2405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCAAT
5'SS Class:
major
3'SS Sequence:
TGTTTCTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
TCTCCTACAATT
Flanking Amino Acid:
RVSCTTAIPTPEEMTKLRSL
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
72
39.5
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
77.2
0.61
0.8
70.3
36.4
Minor 5ss
43.2
-0.7
3
63.3
42
Minor BPS
49.4
0.03
1.8
70.49
40.8

Associated Gene:

Gene:
TAB3
Ensembl Gene ID:
ENSAPLG00000002911
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002952
114308279 - 114323251
14973