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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114318620_114322344_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114318620 - 114322344
Intron Length:
3725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATATAAGAAACT
Flanking Amino Acid:
PVVPPKPYKKEHPNNSKQAS
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
41.5
-0.5
2.5
65.6
44.3

Associated Gene:

Gene:
TAB3
Ensembl Gene ID:
ENSAPLG00000002911
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002952
114308279 - 114323251
14973