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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114356166_114359272_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114356166 - 114359272
Intron Length:
3107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATTT
Flanking Amino Acid:
VMLIGAKYVSGNDK*
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.2
27
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.5
0.57
1
79.6
31.6
Minor 5ss
38.2
-1.3
2.8
50
46.3
Minor BPS
56.1
0.27
1.8
75.31
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038194
114353691 - 114382353
28663
ENSAPLT00000035996
114356152 - 114388610
32459
ENSAPLT00000003288
114356152 - 114383183
27032
ENSAPLT00000048325
114353691 - 114388610
34920
ENSAPLT00000041825
114356152 - 114382353
26202