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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114366206_114366724_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114366206 - 114366724
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTATTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCTAT
U12 Branch Point Sequence:
TTTTCCTCTATT
Flanking Amino Acid:
YAPYWEPSARGIICGLTQFT
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
73.9
38
Major BPS
49.5
-0
1.3
50.1
43.7
Major PPT
68.7
0.42
1
64.9
39.9
Minor 5ss
40.9
-1
3.3
50.6
46.1
Minor BPS
67.4
0.63
1.8
88.55
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035996
114356152 - 114388610
32459
ENSAPLT00000048325
114353691 - 114388610
34920
ENSAPLT00000026617
114356152 - 114388610
32459
ENSAPLT00000041825
114356152 - 114382353
26202
ENSAPLT00000020356
114357274 - 114388610
31337
ENSAPLT00000038194
114353691 - 114382353
28663
ENSAPLT00000003288
114356152 - 114383183
27032
ENSAPLT00000036685
114355166 - 114382353
27188