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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114368680_114371326_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114368680 - 114371326
Intron Length:
2647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTGTTTTTATTT
Flanking Amino Acid:
CFLLCNTGQKGSVAIAGAVV
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.3
73.2
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.5
0.84
0.7
85.8
28.6
Minor 5ss
36
-1.6
2.7
44.9
43
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035996
114356152 - 114388610
32459