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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114370476_114371326_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114370476 - 114371326
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTTCCCTATTT
Flanking Amino Acid:
CFLLCNTGQKSVFSEHGLLT
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.3
73.2
39.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.1
0.65
0.8
78.2
29.4
Minor 5ss
36
-1.6
2.7
44.9
43
Minor BPS
58.9
0.36
2
80.43
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020356
114357274 - 114388610
31337
ENSAPLT00000041825
114356152 - 114382353
26202
ENSAPLT00000003288
114356152 - 114383183
27032
ENSAPLT00000038194
114353691 - 114382353
28663
ENSAPLT00000036685
114355166 - 114382353
27188
ENSAPLT00000026617
114356152 - 114388610
32459
ENSAPLT00000048325
114353691 - 114388610
34920