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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114371370_114372980_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114371370 - 114372980
Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTGTTTTAACT
Flanking Amino Acid:
MCFQDGQAKNTYGTGCFLLC
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.2
84
30.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
65.5
0.35
1
59.1
41.7
Minor 5ss
43.2
-0.7
2.9
57.4
40.7
Minor BPS
71.4
0.75
1.4
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035996
114356152 - 114388610
32459
ENSAPLT00000048325
114353691 - 114388610
34920
ENSAPLT00000026617
114356152 - 114388610
32459
ENSAPLT00000041825
114356152 - 114382353
26202
ENSAPLT00000020356
114357274 - 114388610
31337
ENSAPLT00000038194
114353691 - 114382353
28663
ENSAPLT00000003288
114356152 - 114383183
27032
ENSAPLT00000036685
114355166 - 114382353
27188