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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114373716_114375940_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114373716 - 114375940
Intron Length:
2225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
CTTTTTGTGATT
Flanking Amino Acid:
YGLMKICPSLKSGALTGVPI
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
79.6
0.67
1
77.7
40.7
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
50.2
0.09
2
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026617
114356152 - 114388610
32459
ENSAPLT00000041825
114356152 - 114382353
26202
ENSAPLT00000035996
114356152 - 114388610
32459