About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114373716_114377087_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114373716 - 114377087
Intron Length:
3372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
CTTTTTGTGATT
Flanking Amino Acid:
RSSSEIYGLMKSGALTGVPI
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
79.6
0.67
1
77.7
40.7
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
50.2
0.09
2
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003288
114356152 - 114383183
27032
ENSAPLT00000048325
114353691 - 114388610
34920
ENSAPLT00000038194
114353691 - 114382353
28663
ENSAPLT00000036685
114355166 - 114382353
27188
ENSAPLT00000020356
114357274 - 114388610
31337