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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114377851_114378567_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114377851 - 114378567
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTC
Flanking Amino Acid:
FGTIDSWLIWCLTGGKNGGV
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
77.1
37.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.8
0.96
0.7
93
23.9
Minor 5ss
44
-0.6
2.5
52.7
44
Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026617
114356152 - 114388610
32459
ENSAPLT00000041825
114356152 - 114382353
26202
ENSAPLT00000020356
114357274 - 114388610
31337
ENSAPLT00000038194
114353691 - 114382353
28663
ENSAPLT00000003288
114356152 - 114383183
27032
ENSAPLT00000036685
114355166 - 114382353
27188
ENSAPLT00000035996
114356152 - 114388610
32459
ENSAPLT00000048325
114353691 - 114388610
34920