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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114378706_114379712_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114378706 - 114379712
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTGTTTTTGATT
Flanking Amino Acid:
IPGNNKSFFKFRTGLPLSTY
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.1
0.81
0.8
80.1
37.1
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
63.5
0.51
1.2
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026617
114356152 - 114388610
32459
ENSAPLT00000041825
114356152 - 114382353
26202
ENSAPLT00000020356
114357274 - 114388610
31337
ENSAPLT00000038194
114353691 - 114382353
28663
ENSAPLT00000003288
114356152 - 114383183
27032
ENSAPLT00000036685
114355166 - 114382353
27188
ENSAPLT00000035996
114356152 - 114388610
32459
ENSAPLT00000048325
114353691 - 114388610
34920