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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114380871_114381438_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114380871 - 114381438
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCCCA
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACCTTCTGAAAA
Flanking Amino Acid:
QLNIDITNIKAIGVSNQRET
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
57
41.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75.5
0.57
1
76.3
32.7
Minor 5ss
44.3
-0.6
2.8
57.8
46.3
Minor BPS
52.8
0.08
1.6
59.34
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026617
114356152 - 114388610
32459
ENSAPLT00000041825
114356152 - 114382353
26202
ENSAPLT00000020356
114357274 - 114388610
31337
ENSAPLT00000038194
114353691 - 114382353
28663
ENSAPLT00000003288
114356152 - 114383183
27032
ENSAPLT00000036685
114355166 - 114382353
27188
ENSAPLT00000035996
114356152 - 114388610
32459
ENSAPLT00000048325
114353691 - 114388610
34920