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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114382237_114388505_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114382237 - 114388505
Intron Length:
6269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
AATTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTAATTTATTT
Flanking Amino Acid:
DQGTSSSRFLVFNAKTAELL
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69.4
36.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81
0.7
0.9
74.5
39.4
Minor 5ss
34.4
-1.8
2.8
37.9
40.9
Minor BPS
49.9
0.07
1.8
70.36
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003111
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020356
114357274 - 114388610
31337
ENSAPLT00000048325
114353691 - 114388610
34920
ENSAPLT00000035996
114356152 - 114388610
32459
ENSAPLT00000026617
114356152 - 114388610
32459