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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114416069_114416902_R

Intron Information:

Intron Rank:
130178
Intron Class:
major
Intron Phase:
Intron Coordinates:
114416069 - 114416902
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCCAA
5'SS Class:
major
3'SS Sequence:
TTTTCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TTTTCCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67
40.2
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
85.4
0.8
0.7
80.5
24.8
Minor 5ss
37.2
-1.4
3
47.6
47.8
Minor BPS
67.6
0.55
2
83.78
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017237
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027837
114415912 - 114417629
1718