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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1145107_1145699_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1145107 - 1145699
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTGTGATAACT
Flanking Amino Acid:
IIKTKESGMLGRVNLGLSGV
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.9
35.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
31.1
-2.2
2.6
30
35.1
Minor BPS
47.4
-0.1
2.3
72.99
43.8

Associated Gene:

Gene:
TMEM209
Ensembl Gene ID:
ENSAPLG00000004647
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004819
1137334 - 1147787
10454