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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114535812_114536883_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114535812 - 114536883
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AATAATTTATTT
Flanking Amino Acid:
YLKGTVLFNPDLPGLQCTQY
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
48.4
-0
1.7
65.33
39.2

Associated Gene:

Gene:
NR0B1
Ensembl Gene ID:
ENSAPLG00000019472
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034937
114535208 - 114537128
1921