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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114667736_114668817_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114667736 - 114668817
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GATTTTTGAACA
Flanking Amino Acid:
IPDRDLIPTGTYIEDVARCV
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74.4
35.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
84.9
0.78
0.7
80.8
30.8
Minor 5ss
35.3
-1.7
3.3
48.7
41.3
Minor BPS
63.6
0.42
1.4
69.94
35.8

Associated Gene:

Gene:
IL1RAPL1
Ensembl Gene ID:
ENSAPLG00000003925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004013
114667017 - 115117943
450927