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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114681934_114693641_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114681934 - 114693641
Intron Length:
11708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATATG
5'SS Class:
major
3'SS Sequence:
TAATTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATTTTGTAATT
Flanking Amino Acid:
RHASILLHKRELMYTVELAG
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
75.1
41.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
83
0.74
0.9
77.5
36.2
Minor 5ss
38.3
-1.3
2.9
42.6
44.4
Minor BPS
60
0.39
2
80
36.6

Associated Gene:

Gene:
IL1RAPL1
Ensembl Gene ID:
ENSAPLG00000003925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004013
114667017 - 115117943
450927