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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114693788_114695661_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114693788 - 114695661
Intron Length:
1874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
ACAAGCAGAACA
Flanking Amino Acid:
DDSRVWESDIRVLKEHLGEQ
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
88.7
0.87
0.6
88.3
21.5
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
41.6
-0.6
2
49.62
40.6

Associated Gene:

Gene:
IL1RAPL1
Ensembl Gene ID:
ENSAPLG00000003925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004013
114667017 - 115117943
450927