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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114695795_114850598_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114695795 - 114850598
Intron Length:
154804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTGTAACA
Flanking Amino Acid:
SKLTIQETQLGGSANLTCRA
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.8
0.67
0.9
76.6
36.3
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
59.6
0.3
2
73.92
38.7

Associated Gene:

Gene:
IL1RAPL1
Ensembl Gene ID:
ENSAPLG00000003925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004013
114667017 - 115117943
450927