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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11484600_11532736_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11484600 - 11532736
Intron Length:
48137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTTCAGTGAATT
Flanking Amino Acid:
GALLESGTYEDNYYGTPKPP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
93.5
0.98
0.6
92.1
18.4
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
45.2
-0.2
2.3
67.26
43.5

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689