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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114951241_114953360_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114951241 - 114953360
Intron Length:
2120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTATCTTTAAAC
Flanking Amino Acid:
FREPEILWYKECKSKTWRSS
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
73.6
0.53
1
70.3
38.9
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
76.3
0.81
1.3
80.67
33.3

Associated Gene:

Gene:
IL1RAPL1
Ensembl Gene ID:
ENSAPLG00000003925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004013
114667017 - 115117943
450927