About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_114953548_115014913_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114953548 - 115014913
Intron Length:
61366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGAT
5'SS Class:
major
3'SS Sequence:
TATTGCGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTTAGACT
Flanking Amino Acid:
QDSGLYACVIRNSTYCMKVS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
76.5
0.6
1
68.9
41.7
Minor 5ss
29.9
-2.3
3.8
46.5
48.8
Minor BPS
53.8
0.2
1.7
70.38
41.4

Associated Gene:

Gene:
IL1RAPL1
Ensembl Gene ID:
ENSAPLG00000003925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004013
114667017 - 115117943
450927