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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1150365_1150439_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1150365 - 1150439
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCCCG
5'SS Class:
major
3'SS Sequence:
TTTTCCCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATAAC
U12 Branch Point Sequence:
CACCCCATAACT
Flanking Amino Acid:
YHQHRPRGHAAVSSPPCCQQ
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
57.2
47.5
Major BPS
53
0.08
1.1
55.6
36
Major PPT
82.9
0.74
0.7
77.9
23.9
Minor 5ss
36.8
-1.5
3.3
47.9
47.8
Minor BPS
58.7
0.35
1.7
71.79
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004537
1148923 - 1154844
5922