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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1152139_1152223_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1152139 - 1152223
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CCCTTCTGATGT
Flanking Amino Acid:
LSYYIGMAIASISAQSNFAV
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.8
0.65
0.7
75.5
26.5
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
43.6
-0.4
1.9
55.23
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004537
1148923 - 1154844
5922