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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1152804_1152929_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1152804 - 1152929
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TCTTCGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GTGTCCTCACTG
Flanking Amino Acid:
YLCHNCHFDLMENNGTLYYS
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
82.6
0.73
0.8
76.8
31.8
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
49.2
-0.2
1.9
56.18
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004537
1148923 - 1154844
5922