Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1152968_1153138_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1152968 - 1153138

Intron Length:

171

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGTAGG

5'SS Class:

major

3'SS Sequence:

CCTCATCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

GCACCCTCATCC

Flanking Amino Acid:

NNGTLYYSHVQPLVYTVSLL

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

62.8

43.3

Major BPS

0.5

1.1

71.2

35.2

Major PPT

71.7

0.49

0.8

65.1

30.2

Minor 5ss

31.9

-2.1

2.7

40.1

Minor BPS

47.3

-0.2

1.8

54.18

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004537

1148923 - 1154844

5922