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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1153252_1153359_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1153252 - 1153359
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TCTCTTCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
IYDIHISDCHMPGHHHSAVV
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
66
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.7
0.69
0.7
73.2
31.8
Minor 5ss
29.7
-2.3
3.2
40
40.1
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004537
1148923 - 1154844
5922