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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11532953_11542734_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11532953 - 11542734
Intron Length:
9782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTCT
5'SS Class:
major
3'SS Sequence:
TATTCTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TAATTCTTATTC
Flanking Amino Acid:
VNGNDVTVTPESSEHEEKST
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
74.1
37.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.6
0.73
0.7
78
30.3
Minor 5ss
44.3
-0.6
2.5
59.9
44.5
Minor BPS
61.7
0.35
1.5
67.96
37.7

Associated Gene:

Gene:
MAGI2
Ensembl Gene ID:
ENSAPLG00000012418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012943
11484480 - 11769168
284689