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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1153509_1153710_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1153509 - 1153710
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAG
U12 Branch Point Sequence:
ATGCACTGACCC
Flanking Amino Acid:
PILTNSTISQYFIGVTVLAM
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
60.8
0.27
1.6
60.1
46.3
Major PPT
93.3
0.97
0.6
89.3
19.4
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
45.7
-0.3
1.9
56.49
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004537
1148923 - 1154844
5922